pathfindR.data2.1.0 package

Data Package for 'pathfindR'

biocarta_descriptions

BioCarta Pathways - Descriptions

biocarta_genes

BioCarta Pathways - Gene Sets

cell_markers_descriptions

Human Cell Markers - Descriptions

cell_markers_gsets

Human Cell Markers - Gene Sets

example_active_snws

Example Active Subnetworks

example_comparison_output

Second Example Output for the pathfindR Enrichment Workflow (H.sapiens. - Rheumatoid Arthritis data)

example_custom_genesets_result

Custom Gene Set Enrichment Results

example_experiment_matrix

Example Experiment Matrix for pathfindR - Enriched Term Scoring

example_mmu_input

Example Input for Mus musculus - Myeloma Analysis

example_mmu_output

Example Output for Mus musculus - Myeloma Analysis

example_pathfindR_input

Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis (H.sapiens)

example_pathfindR_output

Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis

example_pathfindR_output_clustered

Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis

go_all_genes

Gene Ontology - All Gene Ontology Gene Sets

kegg_descriptions

KEGG Pathways - Descriptions

kegg_genes

KEGG Pathways - Gene Sets

mmu_kegg_descriptions

Mus Musculus KEGG Pathways - Descriptions

mmu_kegg_genes

Mus Musculus KEGG Pathways - Gene Sets

pathfindR.data_updates

Table of Data for pathfindR

reactome_descriptions

Reactome Pathways - Descriptions

reactome_genes

Reactome Pathways - Gene Sets

Download source packageRead PDF manual

This is a data-only package, containing data needed to run the CRAN package 'pathfindR', a package for enrichment analysis utilizing active subnetworks. This package contains protein-protein interaction network data, data related to gene sets and example input/output data.

  • Maintainer: Ege Ulgen
  • License: MIT + file LICENSE
  • Last published: 2024-04-27

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