Quantification of Color Pattern Variation
kmeans clustering of image imported as a RasterStack. This function ...
Build landmark array for Morpho.
Build list of landmarks or RasterStacks from images using filepath and...
Intersects a RasterStack with an outline. Everything outside of the ou...
Align images using landmarks
Aligns images using niftyreg utilities for automated image registrat...
Calibrate images using ColorChecker.
Calibrate images using ColorChecker.
Calibrate images using (right) half of ColorChecker. Only works for X-...
Plot color pattern prediction for specified PCA values
Create a target image (RasterStack) from a polygon.
External patternize data
GMM clustering of image imported as a RasterStack.
kmeans clustering of image imported as a RasterStack. This function ...
This fucntion calculates the area in which the color pattern is expres...
Extract colors using GMM clustering (for pre-aligned images).
Extract colors using k-means clustering (for pre-aligned images).
Extract colors using k-means clustering (for pre-aligned images).
Aligns images usings transformations obtained from fixed landmarks and...
Aligns images usings transformations obtained from fixed landmarks and...
Aligns images usings transformations obtained from fixed landmarks and...
Aligns images usings transformations obtained from fixed landmarks and...
Extracts color pattern from landmark transformed image using watershed...
This function transforms the individual color pattern rasters as obtai...
This function transforms the individual color pattern rasters as obtai...
Aligns images using niftyreg utilities for automated image registrat...
Aligns images using niftyreg utilities for automated image registrat...
Aligns images using niftyreg utilities for automated image registrat...
Aligns images using niftyreg utilities for automated image registrat...
Aligns images using niftyreg utilities for automated image registrat...
patternize - An R package for quantifying color pattern variation.
Plots the color pattern heatmaps from sumRaster output.
Plot rasterStack as image.
Reduce the resolution of an image imported as a RasterStack by downsam...
Sample landmarks in an image.
Interactive function to sample RGB value from pixel or square area in ...
Interactive function to to draw an outline for masking.
This function sums the individual color pattern RasterLayes as obtaine...
Quantification of variation in organismal color patterns as obtained from image data. Patternize defines homology between pattern positions across images either through fixed landmarks or image registration. Pattern identification is performed by categorizing the distribution of colors using RGB thresholds or image segmentation.
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