Reconstruction of Causal Networks for Data with Random Genetic Effects
Check for consistency in genetic effects
Estimate genetic covariances between all pairs of traits, and test the...
Residuals from the GBLUP
Causal inference with genetic effects
pcgen with residual-based screening
The conditional independence test in pcgen
The pc algorithm applied to residuals
Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified orientation rules. pcgen extends the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of direct genetic effects.