phenopix2.4.5 package

Process Digital Images of a Vegetation Cover

extractDateFilename

Estract dates from filenames

fitted.phenopix

Returns predicted values from phenopix objects.

plotVI

Plot RGB DN, RGB indices and brightness

print.phenopix

Print phenopix objects.

PrintROI

Print an already drawn region of interest

resizeImage

Resize an image (and a tROI) to a given pixel resolution

spatialFilter

Explore all possible fitting and theshold methods from the package phe...

spatialGreen

Process pixel-based greenness indexes

extract

Extract items from an object of class phenopix

autoFilter

A multiple-approach filtering procedure

BeckFit

Fit a double logistic equation to a time series according to Beck et a...

editExposure

Change erroneous exposure values by hand

ElmoreFit

Fit a double logistic equation to a time series according to Elmore et...

combineUncertainty

An evolution of greenProcess for the combination of uncertainty afte...

convert

Convert in data.frame a zoo or ts object

convertROI

Convert a region of interest object from the old structure to the new ...

CutSeason

Cut time series by visual estimation

DrawMULTIROI

Draw a Region of Interest

extractParameters

Extract fitting parameters from a pixel-based analysis

extractVIs

Extracts various vegetation indexes in a ROI

FitDoubleLogBeck

A fit

FitDoubleLogElmore

A fit

FitDoubleLogGu

Fit a double logistic equation to a vector according to Gu et al. (200...

FitDoubleLogKlHeavy

Fit a double logistic function to a vector according to Klosterman et ...

FitDoubleLogKlLight

Fit a double logistic equation to a vector according to Klosterman et ...

get.options

Returns default options for function autoFilter.

getCoords

Extract coordinates (in pixels) of the exposure string from a given JP...

getExposure

Extract exposure from stardot (or similar) images

greenClusters

Performs a cluster analysis on data in output from pixel-based phenolo...

greenExplore

Explore all possible fitting and theshold methods from the package phe...

greenProcess

Fit a curve and extract thresholds from vegetation index time series

GuFit

Fit a double logistic equation to a time series according to Gu et al....

hydrodoy

Converts from and to hydrological day of year

KlostermanFit

Fit a double logistic equation to a vector according to Klosterman et ...

matchExposure

Match exposures retrieved from the header of (stardot) digital images

NDVI

Compute NDVI from Phenocam color indices

PasteSeason

A plotting facility for seasonal data with multiple cycles

PhenoBP

Extract breakpoints on a time series

PhenoDeriv

Extract phenophases from a fitted equation with method Derivatives

PhenoExtract

Generic function for the extraction of phenological thresholds

PhenoGu

Extract phenophases from a fitted equation according to Gu et al. 2009

PhenoKl

Extract phenophases from a fitted equation according to Klosterman et ...

phenopix-package

A package for the processing of images of a vegetation cover

PhenoPlot

A plotting function for phenological thresholds

PhenoTrs

A phenophase method based on fixed thresholds

plot.phenopix

Plotting phenopix objects.

plotBP

A function to plot results of function PhenoBP

plotExplore

Plot an object in output from the greenExplore function

plotSpatial

Plot pixel-based analysis results from spatialGreen and extractParamet...

plotSum

A plotting facility to show the combination of uncertainty

SplineFit

A function to fit a smoothed spline to Phenological Data

splitROI

Splits a ROI into multiple subrois for spatial analysis

structureFolder

Fast structuration of a folder for phenopix process

summarizePhases

An evolution of greenProcess for the combination of uncertainty afte...

summary.phenopix

Summary of phenopix objects.

trainOCR

Extract a training dataset for OCR procedure

update.phenopix

Update phenopix objects.

updateROI

Update pixels included in a ROI of different pixel size

A collection of functions to process digital images, depict greenness index trajectories and extract relevant phenological stages.

  • Maintainer: Gianluca Filippa
  • License: GPL-2
  • Last published: 2025-02-13