photobiologyPlants0.5.0 package

Plant Photobiology Related Functions and Data

B_G

Calculate B:G photon ratio from spectral irradiance.

UVAlw_UV

Calculate UVAlw:UV photon ratio from spectral irradiance.

UVAsw_UV

Calculate UVAsw:UV photon ratio from spectral irradiance.

UVB_PAR

Calculate UVB:PAR photon ratio from spectral irradiance.

UVB_UV

Calculate UVB:UV photon ratio from spectral irradiance.

UVB_UVA

Calculate UVB:UVA photon ratio from spectral irradiance.

Betula_ermanii.mspct

Spectral data for 'Betula ermanii' leaves

carotenoids.mspct

Absorbance spectra for carotenoids.

chlorophylls.mspct

Absorbance spectra for chlorophylls.

chlorophylls_fluorescence.mspct

Fluorescence emission spectra for chlorophylls.

McCree_photosynthesis.mspct

McCree's action spectra for whole-leaf photosynthesis.

Pfr_P_ratio

Calculation of Pfr:Ptot ratio from spectral irradiance

Pfr_P_ratio_mono

Calculation of Pfr:Ptot ratio for monochromatic radiation.

Pfr_Ptot

Calculate phytochrome photoequilibrium

Pfr_Ptot_R_FR

Pr:Ptot ratio (photoequilibrium) from R:FR photon ratio.

photobiologyPlants-package

photobiologyPlants: Plant Photobiology Related Functions and Data

Phy_reaction_rates

Phytochrome reaction rates

Phy_Sigma

Phytochrome Sigma as a function of wavelength

Phy_Sigma_FR

Pfr Sigma as a function of wavelength

Phy_Sigma_R

Pr Sigma as a function of wavelength

PHYs.mspct

Tabulated data for Phytochrome Sigma

R_FR

Calculate R:FR photon ratio from spectral irradiance.

Solidago_altissima.mspct

Spectral optical data for 'Solidago altissima' leaves

UV_PAR

Calculate UV:PAR photon ratio from spectral irradiance.

UVA_PAR

Calculate UVA:PAR photon ratio from spectral irradiance.

UVA_UV

Calculate UVA:UV photon ratio from spectral irradiance.

UVA1_UV

Calculate UVA1:UV photon ratio from spectral irradiance.

UVA2_UV

Calculate UVA2:UV photon ratio from spectral irradiance.

Provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the photoreceptors Phytochromes, Cryptochromes, and UVR8 which are present in plants. It also includes data sets on the optical properties of plants. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

  • Maintainer: Pedro J. Aphalo
  • License: GPL (>= 2)
  • Last published: 2024-04-02