Dendrograms for Evolutionary Analysis
Apply unweighted branch lengths.
Convert a "phylo" object to a dendrogram.
Convert a dendrogram to a "phylo" object.
Reorder tree branches in ladderized pattern.
Dendrograms for evolutionary analysis.
Remove tree nodes by regular expression pattern matching.
Read a dendrogram from parenthetic text.
Set dendrogram attributes for a nested list.
Reset dendrogram height attributes.
Write a dendrogram object to parenthetic text.
Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.