Evolutionary Diversity Metrics for Raster Data
Check for missing arguments in function call
Classify Phylogenetic Endemism using rasters
Delta of Diversity Metrics
Transform a data.frame to raster
Classify Phylogenetic Endemism using rasters
Evaluate if the rasters generated in the function fits on available me...
Calculate Evolutionary distinctiveness for each raster cell
Calculate phylogenetic community metrics for raster data
Calculate phylogenetic diversity for each raster cell
Calculate phylogenetic endemism for a raster
Calculate weighted endemism for each raster cell
Calculate phylogenetic community metrics for raster data
Calculate phylogenetic community metrics and their standardized effect...
Calculate the inverse of range size
Load an example dataset with presence-absence data of 33 tree frogs an...
Prepare rasters and phylogenetic tree to run community metrics
Calculate range size for a set of species using a raster as input
Calculate Evolutionary distinctiveness for raster data
Standardized effect size for Evolutionary distinctiveness
Calculate phylogenetic diversity for raster data
Standardized effect size for Phylogenetic diversity
Calculate phylogenetic endemism for raster data
Standardized effect size for Phylogenetic endemism
Calculate species richness for raster data
Calculate weighted endemism for raster data
Calculate weighted endemism standardized for species richness
Rasterize shapefile
Calculate Evolutionary distinctiveness for each species
Compute species tip length
Compute tree edge lengths and node paths from root to each tip
Phylogenetic Diversity (PD, Faith 1992), Evolutionary Distinctiveness (ED, Isaac et al. 2007), Phylogenetic Endemism (PE, Rosauer et al. 2009; Laffan et al. 2016), and Weighted Endemism (WE, Laffan et al. 2016) for presence-absence raster. Faith, D. P. (1992) <doi:10.1016/0006-3207(92)91201-3> Isaac, N. J. et al. (2007) <doi:10.1371/journal.pone.0000296> Laffan, S. W. et al. (2016) <doi:10.1111/2041-210X.12513> Rosauer, D. et al. (2009) <doi:10.1111/j.1365-294X.2009.04311.x>.
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