Phylogenetic Tools for Eco-Phylogenetics
Clean the name of a fasta file
Convert and Save sequence data frame to fasta file
Conver the data frame to sequential PHYLIP format file
get the names of all the sequences of fasta file
get the names of sequences from a PHYLIP file
Phylogenetic tools for building PHYLIP supermatrix and more
Read FASTA file
read phylip file
Rename the sequences for a fasta file
Delete sequences from fasta file
grouping the data frame containing sequences and names and generate fa...
Substitute the tip labels of a phylogenetic tree
Build PHYLIP supermatrix and RAxML partition file using aligned FASTA ...
A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.