Phylogenetic Tree Models and the Power of Tree Shape Statistics
Comparison of the power of TSS under different models
Generation of rooted binary trees under a given tree model
Plot method for poweRbal_data objects
Print and summary method for poweRbal_data objects
Function for computing the power given the region of acceptance
Functions for generating the TSS data under a tree model
Functions for computing the region of acceptance
Function for displaying TSS distributions
Function to modify the node enumeration in rooted binary trees
Generation of rooted binary trees under Aldous' beta splitting model
Generation of rooted binary trees under the alternative birth-death mo...
Generation of rooted binary trees under the BiSSE model
Generation of the comb or caterpillar tree
Generation of rooted binary trees under the density model
Generation of rooted binary trees under the equiprobable-types-model (...
Generation of rooted binary trees under Ford's alpha model
Generation of the greedy from the bottom tree
Generation of rooted binary trees under tree growing models (no extinc...
Generation of the maximally balanced tree
Generation of rooted binary trees under the PDA model
Generation of rooted binary trees under the Yule model
Get information on included tree shape statistics
Tree shape statistics
The first goal of this package is to provide a multitude of tree models, i.e., functions that generate rooted binary trees with a given number of leaves. Second, the package allows for an easy evaluation and comparison of tree shape statistics by estimating their power to differentiate between different tree models. Please note that this R package was developed alongside the manuscript "Tree balance in phylogenetic models" by S. J. Kersting, K. Wicke, and M. Fischer (2024) <doi:10.48550/arXiv.2406.05185>, which provides further background and the respective mathematical definitions. This project was supported by the project ArtIGROW, which is a part of the WIR!-Alliance ArtIFARM – Artificial Intelligence in Farming funded by the German Federal Ministry of Education and Research (No. 03WIR4805).