Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
determine the weight if a fiven amino acid sequence
Assign an instrument queue configuration to a plate
Derive a randomization of a table.
Centroid a spectrum acquired in profile mode
de-novo on tandem ms
find isotop pattern in a given mass spectrum
FASTA format reader
find index of nearest neighbor
Compute the b and y Fragment Ions of a Peptide Sequence
Generates all possible modification of a given peptide seqence and mod...
Insert sample on a given position
iTRAQ two group analysis
LC-MS Map
Generic methods for mascot results
Mass Deviation Plot
Compute Parent Ion Mass of a Peptide Sequence
Labelling of Peptide Fragment Mass Spectra
Progenesis Importer Function
iTRAQ two group analysis
Label Free Quantification using the top N peptide approach
Plotting pressure profile data from Eksigent LC pumps
A misc function for finding NN time slots in pressure profile data.
Compute a matching between a peptide sequence and a MS2 spectrum
psmSet - a set of peptide spectrum matches
PTM MarkerFinder
PTM MarkerFinder util plot
Sequence Specific Retention Calculator
Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.