purgeR1.8.2 package

Individuals to be evaluated in purging analyses

Check ancestor individuals

Check basic

Check if a variable is boolean or not

Check that optional column is included

Check purging coefficient

Check pedigree class

Check columns with inbreeding values

Check individual index

Check if a variable is a positive integer or not

Check if a variable has length >1

Check if a vector contains NA values

Check that mandatory column names are included

Check Ne

Check if optional column is included

Check observed and expected number of rows

Check individual order

Check columns with reference individuals

Check repeated ids

Check columns with generation numbers

Check that mandatory column names are of type int

Check individuals named zero

Individual inbreeding variation

Expected inbreeding coefficient

Expected ancestral inbreeding coefficient

Expected purged inbreeding coefficient

Inbreeding coefficient

Ancestral inbreeding coefficient

Partial inbreeding coefficient (core function)

Partial inbreeding coefficient (core function)

Purged inbreeding coefficient

Deviation from Hardy-Weinberg equilibrium

Index ancestors

Inbreeding coefficient

Ancestral inbreeding coefficient

Partial inbreeding coefficient

Purged inbreeding coefficient

Opportunity of purging

Map ancestors

Realized effective population size (mean)

Opportunity of purging

Remove individuals not used for purging analyses

Input for igraph

Maternal effects

Rename individuals in a pedigree from 1 to N

Sort individuals (with ancestors on top of descendants)

Sorting steps

Deviation from Hardy-Weinberg equilibrium

Population founders and ancestors

Effective population size

Number of equivalent complete generations

purgeR: Estimation of inbreeding-purging genetic parameters in pedigre...

Reproductive value

Sample dam or sire inherited allele

Search and individuals' ancestors

Grandoffspring

Offspring

Reproductive value