cm_code.transform function

Transform Codes

Transform co-occurrences and/or combinations of codes into a new code(s).

cm_code.transform(
  x2long.obj,
  overlap.code.list = NULL,
  combine.code.list = NULL,
  exclude.code.list = NULL,
  rm.var = NULL
)

Arguments

• x2long.obj: An object from cm_range2long, cm_time2long or cm_df2long.
• overlap.code.list: A list of named character vectors of at least two code column names to aggregate co-occurrences.
• combine.code.list: A list of named character vectors of at least two code column names to combine
• exclude.code.list: A list of named character vectors of at least two code column names to compare and exclude. The last column name is the one that will be excluded.
• rm.var: Name of the repeated measures column.

Returns

Returns a dataframe with overlapping, combined occurrences, and/or exclusion of supplied overlapping codes added.

Note

The code column must be named "code" and your start and end columns must be named "start" and "end".

Examples

## Not run:

foo <- list(
    AA = qcv(terms="1:10"),
    BB = qcv(terms="1:2, 3:10, 19"),
    CC = qcv(terms="1:3, 5:6")
)

foo2  <- list(
    AA = qcv(terms="4:8"),
    BB = qcv(terms="1:4, 10:12"),
    CC = qcv(terms="1, 11, 15:20"),
    DD = qcv(terms="")
)

bar1 <- list(
    transcript_time_span = qcv(00:00 - 1:12:00),
    A = qcv(terms = "0.00:3.00, 5.01, 6.02:7.00, 9.00"),
    B = qcv(terms = "2.40, 3.01:3.02, 5.01, 6.02:7.00, 9.00,
        1.12.00:1.19.01"),
    C = qcv(terms = "2.40:3.00, 5.01, 6.02:7.00, 9.00, 16.25:17.01")
)

(x <- cm_range2long(foo))
(z <- cm_range2long(foo, foo2, v.name="time"))
(dat <- cm_time2long(bar1))

cm_code.transform(x, 
    overlap.code.list = list(ABC=qcv(AA, BB, CC)),
    combine.code.list = list(oABC=qcv(AA, BB, CC)), 
    exclude.code.list = list(ABnoC=qcv(AA, BB, CC))
)

cm_code.transform(z, 
    overlap.code.list = list(ABC=qcv(AA, BB, CC)),
    combine.code.list = list(oABC=qcv(AA, BB, CC)), 
    exclude.code.list = list(ABnoC=qcv(AA, BB, CC)), "time"
)

cm_code.transform(dat, 
    overlap.code.list = list(ABC=qcv(A, B, C)),
    combine.code.list = list(oABC=qcv(A, B, C)), 
    exclude.code.list = list(ABnoC=qcv(A, B, C))
)
## End(Not run)

See Also

cm_range2long, cm_time2long, cm_df2long, cm_code.blank, cm_code.combine, cm_code.exclude, cm_code.overlap