Modelling and Analysis of Real-Time PCR Data
Akaike's second-order corrected Information Criterion
Calculation of Akaike weights/relative likelihoods/delta-AICs
Calculation of qPCR efficiency using dilution curves and replicate boo...
Cy0 alternative to threshold cycles as in Guescini et al. (2008)
The amplification efficiency curve of a fitted object
Calculation of qPCR efficiency and other important qPCR parameters
Evidence ratio for model comparisons with AIC, AICc or BIC
Comparison of all sigmodal models within the exponential region
Calculation of PCR efficiency by fitting an exponential model
The chi-square goodness-of-fit
Batch calculation of qPCR fit parameters/efficiencies/threshold cycles...
Outlier summary for objects of class 'modlist' or 'replist'
(K)inetic (O)utlier (D)etection using several methods
Calculation of likelihood ratios for nested models
Formal lack-Of-Fit test of a nonlinear model against a one-way ANOVA m...
Calculation of qPCR efficiency by the 'linear regression of efficiency...
The maxRatio method as in Shain et al. (2008)
Melting curve analysis with (iterative) Tm identification and peak are...
Calculation of the 'midpoint' region
Create nonlinear models from a dataframe and coerce them into a list
Sigmoidal model selection by different criteria
Parameters that can be changed to tweak the kinetic outlier methods
Batch calculation of qPCR efficiency and other qPCR parameters
Bootstrapping and jackknifing qPCR data
Workhorse function for qPCR model fitting
Summarize measures for the goodness-of-fit
Advanced qPCR data import function
Simple qPCR data import function (i.e. from text files or clipboard)
Combinatorial elimination of plateau and ground phase cycles
Simulation of sigmoidal qPCR data with goodness-of-fit analysis
Plotting qPCR data with fitted curves
Value prediction from a fitted qPCR model
Allen's PRESS (Prediction Sum-Of-Squares) statistic, aka P-square
Error propagation using different methods
Display news and changes of qpcR package versions
The (published) datasets implemented in qpcR
The nonlinear/mechanistic models implemented in qpcR
Calculation of ratios in a batch format for multiple genes/samples
Calculation of ratios from qPCR runs with/without reference genes
Calculation of ratios in a batch format from external PCR parameters
Averaging of multiple reference genes
Amalgamation of single data models into a model containing replicates
An (overlayed) residuals barplot
Residual variance of a fitted model
Root-mean-squared-error of a fitted model
Adjusted R-square value of a fitted model
R-square value of a fitted model
Residual sum-of-squares of a fitted model
Calculation of qPCR efficiency by the 'window-of-linearity' method
Calculation of the qPCR takeoff point
Updating and refitting a qPCR model
Model fitting, optimal model selection and calculation of various features that are essential in the analysis of quantitative real-time polymerase chain reaction (qPCR).