qtlcharts0.18 package

Interactive Graphics for QTL Experiments

cbindQTLeffects

Combine multiple runs of estQTLeffects

estQTLeffects

Calculate QTL effects at each position across the genome

iboxplot

Modern boxplot linked to underlying histrograms

idotplot

Interactive phenotype x genotype plot

iheatmap

Interactive heat map

ipleiotropy

Tool to explore pleiotropy

iplot

Interactive scatterplot

iplotCorr

Image of correlation matrix with linked scatterplot

iplotCurves

Plot of a bunch of curves, linked to points in scatterplots

iplotMap

Interactive genetic map plot

iplotMScanone

Interactive LOD curve

iplotPXG

Interactive phenotype x genotype plot

iplotRF

Interactive plot of recombination fractions

iplotScanone

Interactive LOD curve

iplotScantwo

Interactive plot of 2d genome scan

itriplot

Interactive plot of trinomial probabilities

qtlcharts-package

R/qtlcharts: Interactive charts for QTL data

qtlcharts-shiny

Shiny bindings for R/qtlcharts widgets

qtlchartsversion

print the installed version of R/qtlcharts

scat2scat

Scatterplot driving another scatterplot

setScreenSize

Set default maximum screen size

Download source packageRead PDF manual

Web-based interactive charts (using D3.js) for the analysis of experimental crosses to identify genetic loci (quantitative trait loci, QTL) contributing to variation in quantitative traits. Broman (2015) <doi:10.1534/genetics.114.172742>.

  • Maintainer: Karl W Broman
  • License: GPL-3 | file LICENSE
  • Last published: 2025-05-10

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