REST API Client for the 'PGS' Catalog
Bind PGS Catalog objects
Clear quincunx cache of memoised functions
An S4 class to represent a set of cohorts
Constructor for the S4 cohorts object.
Collect development and evaluation pgs_ids
Collect samples_variants and samples_training
Does a string contain a question mark?
Extract the count field from a JSON response
Filter PGS Catalog objects by identifier.
Returns the position of the first non-NA value
Get ancestry categories and classes
Get PGS Catalog Ancestry Symbol Mappings
Get PGS Catalog Cohorts
Get PGS Catalog Performance Metrics
Get PGS Catalog Publications
Get PGS Catalog Releases
Get PGS Catalog Sample Sets
Get PGS Catalog Scores
Get PGS Catalog Trait Categories
Get PGS Catalog Traits
Is the response paginated?
Is a string a PGS Catalog identifier?
Is a string a PubMed ID?
Convert a named list to an S4 object
Pretty printing of 404 error
Pretty printing of 404 error
Pretty printing of empty response
Number of pages
Number of PGS Catalog entities
Pretty printing of no error message
Convert NR (Not Recorded) to NA (Not Available)
Generate offset values
Browse dbSNP from SNP identifiers.
Browse PGS Catalog entities from the PGS Catalog Web Graphical User In...
Browse PubMed from PubMed identifiers.
An S4 class to represent a set of PGS Catalog Performance Metrics
Constructor for the S4 performance_metrics object.
Map PGP identifiers to PGS identifiers
Map PGP identifiers to PPM identifiers
Map PGP identifiers to PSS identifiers
PGS REST API server
Map PGS identifiers to PGP identifiers
Map PGS identifiers to PPM identifiers
Map PGS identifiers to PSS identifiers
Map PGS identifiers to GWAS study identifiers
Map PPM identifiers to PGP identifiers
Map PPM identifiers to PGS identifiers
Map PPM identifiers to PSS identifiers
Map PSS identifiers to PGP identifiers
Map PSS identifiers to PGS identifiers
Map PSS identifiers to PPM identifiers
An S4 class to represent a set of PGS Catalog Publications
Constructor for the S4 publications object.
Read a polygenic scoring file
An S4 class to represent a set of PGS Catalog Releases
Constructor for the S4 releases object.
Remap identifiers
Request a paginated resource from the PGS REST API
Pretty printing of http error
Request a resource from the PGS REST API
Convert an S4 object into a list
An S4 class to represent a set of PGS Catalog Sample Sets
Constructor for the S4 sample_sets object.
An S4 class to represent a set of PGS Catalog Polygenic Scores
Constructor for the S4 scores object.
Set operations on PGS Catalog objects
Map GWAS studies identifiers to PGS identifiers
Subset a cohorts object
Subset a performance_metrics object
Subset a publications object
Subset a releases object
Subset a sample_sets object
Subset a scores object
Subset a trait_categories object
Subset a traits object
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An S4 class to represent a set of PGS Catalog Trait Categories
Constructor for the S4 trait_categories object.
An S4 class to represent a set of PGS Catalog Traits
Constructor for the S4 traits object.
User agent identification
Export a PGS Catalog object to xlsx
Programmatic access to the 'PGS' Catalog. This package provides easy access to 'PGS' Catalog data by accessing the REST API <https://www.pgscatalog.org/rest/>.
Useful links