Create Interactive 3D Visualizations of Molecular Data
Zoom to center of atom selection
Shiny bindings for r3dmol
Objects exported from other packages
Create and add model to viewer
List of multiple start/stop locations.
Initialise a WebGL-based viewer
Create and add shape
Add arrow shape
Create and add model to viewer
Add custom shape component from user supplied function
Add Cylinder Between Points
Construct isosurface from volumetric data in gaussian cube format
Add label to viewer
Add Lines Between Points
Create and add model to viewer
Add colored outline to all objects in scene.
Add property labels
Add Residue Labels
Add shape object to viewer
Add Sphere Shape
Overwrite Previous Style
Add surface representation to atoms
Animate all models in viewer from their respective frames
Load structure from package bio3d
Add button into viewer
Re-center the viewer around the provided selection
Clear scene of all objects
Create a new model from atoms specified by sel
Enable/disable fog for content far from the camera
Fetch Structure from PDB
Return specified model
Quickly View Given Structure
Create a grid of viewers that share a WebGL canvas
Get viewer animate status
Selection Across Multiple Residues
Convert widgets to PNG image
Remove all labels from viewer
Delete all existing models
Remove all shape objects from viewer
Remove all labels from viewer
Remove label from viewer
Render current state of viewer
Rotate scene by angle degrees around axis
Selection Function for r3dmol
Set color by element
Set the default cartoon quality for newly created models
Set the duration of the hover delay
Set the distance between the model and the camera
Set view projection scheme
Set slab of view
Add Style to Selection
Sets the view to the specified translation, zoom, rotation and style
Set viewer properties
Set lower and upper limit stops for zoom
Specify Styling for Generic Shapes
Run examples of using r3dmol in a Shiny app
Continuously rotate a scene around the specified axis
Stop animation of all models in viewer
Specify Styling for Cartoon
Specify Styling for Labels
Specify Styling for Lines
Specify Styling for Sphere
Specify Styling for Stick
Specify Styling for Surface
Translate current view or models by x,y screen coordinates
Unit cell visualization
Create a 3 dimensional vector
Add model's vibration
Specifying setup options for viewer
Zoom current view by a constant factor
Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.