rChEA30.2.0 package

R Client for the 'ChEA3' Transcription Factor Enrichment API

displayTopN

Print the top-n rows for each ChEA3 collection

exportResults

Export rChEA3 Results to Excel

queryChEA3

Query ChEA3 API for TF enrichment

saveViz

Save a Visualization to File (PDF, PNG, or SVG)

today

Today's Date at Package Load Time

visualizeRank

Visualize top transcription factors (TFs) from ChEA3 results

Download source packageRead PDF manual

Interface to the 'ChEA3' transcription factor enrichment API. 'ChEA3' integrates evidence from ChIP-seq, co-expression, and literature resources to prioritize transcription factors regulating a given set of genes. This package provides convenient R functions to query the API, retrieve ranked results across collections (including integrated scores), and standardize output for downstream analysis in R/Bioconductor workflows. See <https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446> for further details.

  • Maintainer: Christophe Tav
  • License: MIT + file LICENSE
  • Last published: 2025-10-15

Useful links