Generating Various Numerical Representation Schemes of DNA Sequences
diversity function for make_kmer_vec
Check if the DNA sequence are in the 4 default types
The Dinucleotide-based Auto Covariance Descriptor
The Dinucleotide-based Auto-cross Covariance Descriptor
The Dinucleotide-based Cross Covariance Descriptor
The Pseudo Dinucleotide Composition Descriptor
The Pseudo K-tupler Composition Descriptor
The Trinucleotide-based Auto Covariance Descriptor
The Trinucleotide-based Auto-cross Covariance Descriptor
The Trinucleotide-based Cross Covariance Descriptor
Get DNA/RNA Sequences from Genbank by GI ID
id_x_s function for make_kmer_vec
The Basic Kmer Descriptor
The Increment Of Diversity Descriptors
Calculate The Basic Kmer Feature Vector
DNA Sequence Similarity Calculation based on Gene Ontology (GO) Simila...
Parallellized DNA/RNA Sequence Similarity Calculation based on Sequenc...
Read DNA/RNA Sequences in FASTA Format
The Reverse chars
DNA Similarity Calculation based on Gene Ontology (GO) Similarity
DNA/RNA Sequence Alignment for Two DNA/RNA Sequences
Comprehensive toolkit for generating various numerical representation schemes of DNA sequence. The descriptors and similarity scores included are extensively used in bioinformatics and chemogenomics.