rPDBapi2.1.2 package

Add or Merge Properties for RCSB PDB Data Fetching

Automatically Determine the Sequence Type

Create a Chemical Search Operator for SMILES/InChI Descriptors

Create a Comparison Search Operator

Create a Contains Phrase Search Operator

Create a Contains Words Search Operator

Fetch RCSB PDB Data Based on Specified Criteria

Create a Default Search Operator

Describe Chemical Compound from RCSB PDB

Create an Exact Match Search Operator

Create an Existence Search Operator

Fetch Data from RCSB PDB Using a JSON Query

Search for and Retrieve Paper Titles from PDB

Retrieve Specific Fields for Search Results from RCSB PDB

Generate a JSON Query for RCSB PDB Data Retrieval

Retrieve FASTA Sequence from PDB Entry or Specific Chain

Retrieve Information for a Given PDB ID

Generate a PDB API URL

Download and Process PDB Files from the RCSB Database

Handle API Errors

Infer the Appropriate Search Service for RCSB PDB Queries

Create an Inclusion Search Operator

Helper Function: Parse FASTA Text to List Grouped by Header

Parse API Response

Perform a Search in the RCSB PDB

Search Query Function

Create a Grouped Query Object for RCSB PDB Searches

Create a Query Node for RCSB PDB Searches

Create a Range Search Operator

Define Request Options for RCSB PDB Search Queries

Convert RCSB PDB Response Data into a Dataframe

rPDBapi: A Comprehensive Interface for Accessing the Protein Data Bank

Create a Scored Result Object for PDB Searches

Perform a GraphQL Query to RCSB PDB

Send API Request to a Specified URL

Create a Sequence Motif Operator for RCSB PDB Searches

Create a Sequence Operator for Sequence-Based Searches

Create a Structure Operator for Structure-Based Searches

Recursively Walk Through a Nested Dictionary