extract_popDemographics function

This is a function that steps forward through time steps of a SHAPE run and extracts population demographic information. This includes Fitness, Number of Lineages, and Transitions between dominant genotypes. Most important it will also return the information related to which lineages will eventually establish in the population, a piece of information that will be critical for downstream lineage specific information extraction.

  • Maintainer: Jonathan Dench
  • License: GPL-3
  • Last published: 2019-07-19

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