rSPDE2.4.0 package

Rational Approximations of Fractional Stochastic Partial Differential Equations

augment.rspde_lme

Augment data with information from a rspde_lme object

bru_get_mapper.inla_rspde_anisotropic2d

rSPDE anisotropic inlabru mapper

bru_get_mapper.inla_rspde_matern1d

rSPDE stationary inlabru mapper

bru_get_mapper.inla_rspde_spacetime

rSPDE space time inlabru mapper

bru_get_mapper.inla_rspde

rSPDE inlabru mapper

construct.spde.matern.loglike

Constructor of Matern loglikelihood functions for non-stationary model...

create_train_test_indices

Create train and test splits to be used in the cross_validation func...

cross_validation

Perform cross-validation on a list of fitted models.

folded.matern.covariance.1d

The 1d folded Matern covariance function

folded.matern.covariance.2d

The 2d folded Matern covariance function

fractional.operators

Rational approximations of fractional operators

get.initial.values.rSPDE

Initial values for log-likelihood optimization in rSPDE models with a ...

gg_df

Data frame for result objects from R-INLA fitted models to be used in ...

gg_df.rspde_result

Data frame for rspde_result objects to be used in ggplot2

glance.rspde_lme

Glance at an rspde_lme object

graph_data_rspde

Data extraction from metric graphs for 'rSPDE' models

group_predict

Perform prediction on a testing set based on a training set

intrinsic.matern.operators

Covariance-based approximations of intrinsic fields

matern.covariance

The Matern covariance function

matern.operators

Rational approximations of stationary Gaussian Matern random fields

matern.rational.cov

Rational approximation of the Matern covariance

matern.rational

Rational approximation of the Matern fields on intervals and metric gr...

matern2d.operators

Rational approximations of stationary anisotropic Gaussian Matern rand...

operator.operations

Operations with the Pr and Pl operators

precision.CBrSPDEobj

Get the precision matrix of CBrSPDEobj objects

precision.CBrSPDEobj2d

Get the precision matrix of CBrSPDEobj2d objects

precision.inla_rspde

Get the precision matrix of inla_rspde objects

precision.rSPDEobj1d

Get the precision matrix of rSPDEobj1d objects

precision.spacetimeobj

Get the precision matrix of spacetimeobj objects

predict.CBrSPDEobj

Prediction of a fractional SPDE using the covariance-based rational SP...

predict.CBrSPDEobj2d

Prediction of an anisotropic Whittle-Matern field

predict.inla_rspde_matern1d

Predict method for 'inlabru' stationary Matern 1d models

predict.rspde_lme

Prediction of a mixed effects regression model on a metric graph.

predict.rSPDEobj

Prediction of a fractional SPDE using a rational SPDE approximation

predict.spacetimeobj

Prediction of a space-time SPDE

rational.order-set

Changing the order of the rational approximation

rational.order

Get the order of rational approximation.

rational.type-set

Changing the type of the rational approximation

rational.type

Get type of rational approximation.

require.nowarnings

Warnings free loading of add-on packages

rspde_lme

rSPDE linear mixed effects models

rSPDE-package

Rational approximations of fractional SPDEs.

rSPDE.A1d

Observation matrix for finite element discretization on R

rspde.anistropic2d

Rational approximations of stationary anisotropic Gaussian Matern rand...

rSPDE.Ast

Observation matrix for space-time models

rSPDE.construct.matern.loglike

Constructor of Matern loglikelihood functions.

rSPDE.fem1d

Finite element calculations for problems on R

rSPDE.fem2d

Finite element calculations for problems in 2D

rSPDE.loglike

Object-based log-likelihood function for latent Gaussian fractional SP...

rspde.make.A

Observation/prediction matrices for rSPDE models.

rspde.make.index

rSPDE model index vector generation

rspde.matern.intrinsic

Intrinsic Matern rSPDE model object for INLA

rSPDE.matern.loglike

Object-based log-likelihood function for latent Gaussian fractional SP...

rspde.matern.precision.integer.opt

Optimized precision matrix of stationary Gaussian Matern random fields...

rspde.matern.precision.integer

Precision matrix of stationary Gaussian Matern random fields with inte...

rspde.matern.precision.opt

Optimized precision matrix of the covariance-based rational approximat...

rspde.matern.precision

Precision matrix of the covariance-based rational approximation of sta...

rspde.matern

Matern rSPDE model object for INLA

rspde.matern1d

Matern rSPDE model object for INLA

rspde.mesh.project

Calculate a lattice projection to/from an inla.mesh for rSPDE object...

rspde.metric_graph

Matern rSPDE model object for metric graphs in INLA

rspde.result

rSPDE result extraction from INLA estimation results

rspde.spacetime

Space-Time Random Fields via SPDE Approximation

simulate.CBrSPDEobj

Simulation of a fractional SPDE using the covariance-based rational SP...

simulate.CBrSPDEobj2d

Simulation of a fractional SPDE using the covariance-based rational SP...

simulate.intrinsicCBrSPDEobj

Simulation of a fractional intrinsic SPDE using the covariance-based r...

simulate.rSPDEobj

Simulation of a fractional SPDE using a rational SPDE approximation

simulate.rSPDEobj1d

Simulation of a Matern field using a rational SPDE approximation

simulate.spacetimeobj

Simulation of space-time models

spacetime.operators

Space-time random fields

spde.make.A

Observation/prediction matrices for rSPDE models with integer smoothne...

spde.matern.loglike

Parameter-based log-likelihood for a latent Gaussian Matern SPDE model...

spde.matern.operators

Rational approximations of non-stationary Gaussian SPDE Matern random ...

summary.CBrSPDEobj

Summarise CBrSPDE objects

summary.CBrSPDEobj2d

Summarise CBrSPDEobj2d objects

summary.rspde_lme

Summary Method for rspde_lme Objects.

summary.rspde_result

Summary for posteriors of field parameters for an inla_rspdemodel fr...

summary.rSPDEobj

Summarise rSPDE objects

summary.rSPDEobj1d

Summarise rSPDE objects without FEM

summary.spacetimeobj

Summarise spacetime objects

transform_parameters_anisotropic

Transform Anisotropic SPDE Model Parameters to Original Scale

transform_parameters_spacetime

Transform Spacetime SPDE Model Parameters to Original Scale

update.CBrSPDEobj

Update parameters of CBrSPDEobj objects

update.CBrSPDEobj2d

Update parameters of CBrSPDEobj2d objects

update.rSPDEobj

Update parameters of rSPDEobj objects

update.rSPDEobj1d

Update parameters of rSPDEobj1d objects

update.spacetimeobj

Update parameters of spacetimeobj objects

variogram.intrinsic.spde

Variogram of intrinsic SPDE model

Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.

  • Maintainer: David Bolin
  • License: GPL (>= 3) | file LICENSE
  • Last published: 2024-12-02