A Code Generator for ODE-Based Models
Return library name
Plot Qualitative Stoichiometry Matrix
rodeo Class
Package to Facilitate ODE-Based Modeling
Assign Values to Parameters
Assign Values to State Variables
Numerical Integration Over a Single Time Step
Validation of a Stoichiometry Matrix
Numerical Integration
Export a Data Frame as HTML/TEX Code
Build a model from the contents of a workbook
Generate Executable Code
Clean-up a rodeo Object
Generation of Forcing Functions in Fortran
Code Generator
Query Values of Parameters
Query Values of State Variables
Initialize a rodeo Object
Initialize Internal ODE Solver
Return name of library function
Return the Stoichiometry Matrix
Stoichiometry Matrix from Reaction Equations
Provides an R6 class and several utility methods to facilitate the implementation of models based on ordinary differential equations. The heart of the package is a code generator that creates compiled 'Fortran' (or 'R') code which can be passed to a numerical solver. There is direct support for solvers contained in packages 'deSolve' and 'rootSolve'.