romic1.3.3 package

R for High-Dimensional Molecular Data

add_pcs

Add PCA Loadings

app_flow

Flow

app_heatmap

Interactive Heatmap

app_pcs

PC Plot

calculate_sample_mahalanobis_distances

Calculate Sample Mahalanobis Distances

center_tomic

Center T* Omic

check_design

Check Design

check_tidy_omic

Check Tidy Omic

check_tomic

Check T*Omic

check_triple_omic

Check Triple Omic

convert_wide_to_tidy_omic

Convert Wide to Tidy Omic

create_tidy_omic

Create Tidy Omic

create_triple_omic

Create Triple Omic

downsample_heatmap

Downsample Heatmap

export_tomic_as_tidy

Export T*Omic in Tidy Format

export_tomic_as_triple

Export T*Omic as Triple

export_tomic_as_wide

Export T*Omic as Wide Data

filter_tomic

Filter T* Omics

filterInput

Filter Input

filterServer

Filter Server

format_names_for_plotting

Format Names for Plotting

get_design_tbl

Get Design Table

get_tomic_table

Get Tomic Table

ggBivOutput

ggBivariate Output

ggBivServer

ggBivariate Server

ggplotOutput

ggplot Output

ggplotServer

ggplot Server

ggUnivOutput

ggUnivariate Output

ggUnivServer

ggUnivariate Server

hclust_order

Hierarchical clustering order

impute_missing_values

Impute Missing Values

infer_tomic_table_type

Infer Tomic Table Type

lassoInput

Lasso Input

lassoServer

Lasso Server

organizeInput

Organize Input

organizeServer

Organize Servers

plot_bivariate

Bivariate Plot

plot_heatmap

Plot Heatmap

plot_missing_values

Plot Missing Values

plot_univariate

Univariate Plot

plotsaverInput

Plot Saver Input

plotsaverServer

Plot Saver Server

prepare_example_datasets

Prepare Example Datasets

reconcile_triple_omic

Reconcile Triple Omic

reform_tidy_omic

Reform Tidy Omic

remove_missing_values

Remove Missing Values

romic-package

romic: R for High-Dimensional Molecular Data

shiny_filter_test

Shiny Filter Test

shiny_ggbiv_test

Shiny ggBivariate Test

shiny_ggplot_test

Shiny ggplot Test

shiny_gguniv_test

Shiny ggUnivariate Test

shiny_lasso_test_reactval

Shiny Lasso Test w/ Reactive Values

shiny_lasso_test

Shiny Lasso Test

shiny_organize_test

Shiny Organize Test

shiny_plotsaver_test

Shiny Plot Saver Test

shiny_sort_test

Shiny Sort Test

sort_tomic

Sort Triple Omic

sort_triple_arrange

Sort Triple Arrange

sort_triple_hclust

Sort Triple Hclust

sortInput

Sort Input

sortServer

Sort Server

tidy_to_triple

Tidy omic to triple omic

tomic_sort_status

T* Omic Sort Status

tomic_to_matrix

Tomic To Matrix

tomic_to

T* Omic To

triple_to_tidy

Triple Omic to Tidy Omic

try_brushedPoints

Try brushedPoints

update_sample_factors

Update Sample Factors

update_tidy_omic

Update Tidy Omic

update_tomic

Update T* Omic

var_partial_match

Var Partial Match

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

  • Maintainer: Sean Hackett
  • License: MIT + file LICENSE
  • Last published: 2026-01-31