filterGenes function

Filter genes

filterGenes(x, mu = 0.01, cv = 2, fano = FALSE)

Arguments

• x: Matrix to be normalised with cells in rows and genes in columns
• mu: Meam threshold
• cv: Coefficient of variation or Fano factor threshold.
• fano: Default TRUE. Predicate treat CV as Fano factor or CV

Returns

Returns a filtered matrix with same number of cells but fewer genes than 'x'

Details

Filter genes Filter genes by mean and either coefficient of variation, cv or Fano factor.

Examples

## Not run:

expressionGenesFiltered <- filterGenes(x)
## End(Not run)

Author(s)

Wajid Jawaid