Interface to the 'Open Tree of Life' API
Get all the trees associated with a particular study
Study Metadata
Study Subtree
Study Tree
Check that OTT ids occur in the Synthetic Tree
List trees ids in objects returned by studies_find_studies and `stud...
ott_id and flags for taxonomic names matched by tnrs_match_names
Inspect and Update alternative matches for a name returned by tnrs_mat...
An Interface to the Open Tree of Life API
List of studies used in the Tree of Life
Strip OTT ids from tip labels
Find a Study
Find Trees
Properties of the Studies
Get external identifiers for data associated with an Open Tree study
List the synonyms for a given name
Lineage of a taxon
Get external identifiers for data associated with an Open Tree taxon
Methods for Taxonomy
Information about the Open Tree Taxonomy
Taxonomic MRCA
Taxonomy subtree
Taxon information
TNRS contexts
Infer the taxonomic context from a list of names
Match names to the Open Tree Taxonomy
Information about the Tree of Life
Subtree from the Open Tree of Life
MRCA of taxa from the synthetic tree
Node info
Extract a subtree from the synthetic tree
An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
Useful links