rpact4.1.0 package

Confirmatory Adaptive Clinical Trial Design and Analysis

AccrualTime

Accrual Time

AnalysisResults

Basic Class for Analysis Results

AnalysisResultsConditionalDunnett

Analysis Results Multi-Arm Conditional Dunnett

AnalysisResultsEnrichment

Basic Class for Analysis Results Enrichment

AnalysisResultsEnrichmentFisher

Analysis Results Enrichment Fisher

AnalysisResultsEnrichmentInverseNormal

Analysis Results Enrichment Inverse Normal

AnalysisResultsFisher

Analysis Results Fisher

AnalysisResultsGroupSequential

Analysis Results Group Sequential

AnalysisResultsInverseNormal

Analysis Results Inverse Normal

AnalysisResultsMultiArm

Basic Class for Analysis Results Multi-Arm

AnalysisResultsMultiArmFisher

Analysis Results Multi-Arm Fisher

AnalysisResultsMultiArmInverseNormal

Analysis Results Multi-Arm Inverse Normal

AnalysisResultsMultiHypotheses

Basic Class for Analysis Results Multi-Hypotheses

as.data.frame.AnalysisResults

Coerce AnalysisResults to a Data Frame

as.data.frame.ParameterSet

Coerce Parameter Set to a Data Frame

as.data.frame.PowerAndAverageSampleNumberResult

Coerce Power And Average Sample Number Result to a Data Frame

as.data.frame.StageResults

Coerce Stage Results to a Data Frame

as.data.frame.TrialDesign

Coerce TrialDesign to a Data Frame

as.data.frame.TrialDesignCharacteristics

Coerce TrialDesignCharacteristics to a Data Frame

as.data.frame.TrialDesignPlan

Coerce Trial Design Plan to a Data Frame

as.data.frame.TrialDesignSet

Coerce Trial Design Set to a Data Frame

as.matrix.FieldSet

Coerce Field Set to a Matrix

as251Normal

Algorithm AS 251: Normal Distribution

as251StudentT

Algorithm AS 251: Student T Distribution

ClosedCombinationTestResults

Analysis Results Closed Combination Test

ConditionalPowerResults

Conditional Power Results

ConditionalPowerResultsEnrichmentMeans

Conditional Power Results Enrichment Means

ConditionalPowerResultsEnrichmentRates

Conditional Power Results Enrichment Rates

ConditionalPowerResultsMeans

Conditional Power Results Means

ConditionalPowerResultsRates

Conditional Power Results Rates

ConditionalPowerResultsSurvival

Conditional Power Results Survival

Dataset

Dataset

DatasetMeans

Dataset of Means

DatasetRates

Dataset of Rates

DatasetSurvival

Dataset of Survival Data

EventProbabilities

Event Probabilities

fetch.ParameterSet

Extract a single parameter

FieldSet

Field Set

getAccrualTime

Get Accrual Time

getAnalysisResults

Get Analysis Results

getAvailablePlotTypes

Get Available Plot Types

getClosedCombinationTestResults

Get Closed Combination Test Results

getClosedConditionalDunnettTestResults

Get Closed Conditional Dunnett Test Results

getConditionalPower

Get Conditional Power

getConditionalRejectionProbabilities

Get Conditional Rejection Probabilities

getData

Get Simulation Data

getDataset

Get Dataset

getDesignCharacteristics

Get Design Characteristics

getDesignConditionalDunnett

Get Design Conditional Dunnett Test

getDesignFisher

Get Design Fisher

getDesignGroupSequential

Get Design Group Sequential

getDesignInverseNormal

Get Design Inverse Normal

getDesignSet

Get Design Set

getEventProbabilities

Get Event Probabilities

getFinalConfidenceInterval

Get Final Confidence Interval

getFinalPValue

Get Final P Value

getGroupSequentialProbabilities

Get Group Sequential Probabilities

getLambdaStepFunction

Get Lambda Step Function

getLogLevel

Get Log Level

getLongFormat

Get Long Format

getNumberOfSubjects

Get Number Of Subjects

getObjectRCode

Get Object R Code

getObservedInformationRates

Get Observed Information Rates

getOutputFormat

Get Output Format

getParameterCaption

Get Parameter Caption

getParameterName

Get Parameter Name

getParameterType

Get Parameter Type

getPerformanceScore

Get Performance Score

getPiecewiseSurvivalTime

Get Piecewise Survival Time

getPlotSettings

Get Plot Settings

getPowerAndAverageSampleNumber

Get Power And Average Sample Number

getPowerCounts

Get Power Counts

getPowerMeans

Get Power Means

getPowerRates

Get Power Rates

getPowerSurvival

Get Power Survival

getRawData

Get Simulation Raw Data for Survival

getRepeatedConfidenceIntervals

Get Repeated Confidence Intervals

getRepeatedPValues

Get Repeated P Values

getSampleSizeCounts

Get Sample Size Counts

getSampleSizeMeans

Get Sample Size Means

getSampleSizeRates

Get Sample Size Rates

getSampleSizeSurvival

Get Sample Size Survival

getSimulationCounts

Get Simulation Counts

getSimulationEnrichmentMeans

Get Simulation Enrichment Means

getSimulationEnrichmentRates

Get Simulation Enrichment Rates

getSimulationEnrichmentSurvival

Get Simulation Enrichment Survival

getSimulationMeans

Get Simulation Means

getSimulationMultiArmMeans

Get Simulation Multi-Arm Means

getSimulationMultiArmRates

Get Simulation Multi-Arm Rates

getSimulationMultiArmSurvival

Get Simulation Multi-Arm Survival

getSimulationRates

Get Simulation Rates

getSimulationSurvival

Get Simulation Survival

getStageResults

Get Stage Results

getTestActions

Get Test Actions

getWideFormat

Get Wide Format

kableParameterSet

Create output in Markdown

knit_print.FieldSet

Print Field Set in Markdown Code Chunks

knit_print.ParameterSet

Print Parameter Set in Markdown Code Chunks

knit_print.SummaryFactory

Print Summary Factory in Markdown Code Chunks

length.TrialDesignSet

Length of Trial Design Set

mvnprd

Original Algorithm AS 251: Normal Distribution

mvstud

Original Algorithm AS 251: Student T Distribution

names.AnalysisResults

Names of a Analysis Results Object

names.FieldSet

Names of a Field Set Object

names.SimulationResults

Names of a Simulation Results Object

names.StageResults

Names of a Stage Results Object

names.TrialDesignSet

Names of a Trial Design Set Object

NumberOfSubjects

Number Of Subjects

param_accrualIntensity_counts

Parameter Description: accrualIntensity for Counts

param_accrualIntensity

Parameter Description: Accrual Intensity

param_accrualIntensityType

Parameter Description: Accrual Intensity Type

param_accrualTime_counts

Parameter Description: accrualTime for Counts

param_accrualTime

Parameter Description: Accrual Time

param_activeArms

Parameter Description: Active Arms

param_adaptations

Parameter Description: Adaptations

param_allocationRatioPlanned_sampleSize

Parameter Description: Allocation Ratio Planned With Optimum Option

param_allocationRatioPlanned

Parameter Description: Allocation Ratio Planned

param_alpha

Parameter Description: Alpha

param_alternative_simulation

Parameter Description: Alternative for Simulation

param_alternative

Parameter Description: Alternative

param_beta

Parameter Description: Beta

param_bindingFutility

Parameter Description: Binding Futility

param_calcEventsFunction

Parameter Description: Calculate Events Function

param_calcSubjectsFunction

Parameter Description: Calculate Subjects Function

param_conditionalPower

Parameter Description: Conditional Power

param_conditionalPowerSimulation

Parameter Description: Conditional Power

param_dataInput

Parameter Description: Data Input

param_design_with_default

Parameter Description: Design with Default

param_design

Parameter Description: Design

param_digits

Parameter Description: Digits

param_directionUpper

Parameter Description: Direction Upper

param_dropoutRate1

Parameter Description: Dropout Rate (1)

param_dropoutRate2

Parameter Description: Dropout Rate (2)

param_dropoutTime

Parameter Description: Dropout Time

param_effectList

Parameter Description: Effect List

param_effectMatrix

Parameter Description: Effect Matrix

param_effectMeasure

Parameter Description: Effect Measure

param_epsilonValue

Parameter Description: Epsilon Value

param_eventTime

Parameter Description: Event Time

param_fixedExposureTime_counts

Parameter Description: fixedExposureTime for Counts

param_followUpTime_counts

Parameter Description: followUpTime for Counts

param_gED50

Parameter Description: G ED50

param_grid

Parameter Description: Grid (Output Specification Of Multiple Plots)

param_groups

Parameter Description: Number Of Treatment Groups

param_hazardRatio

Parameter Description: Hazard Ratio

param_includeAllParameters

Parameter Description: Include All Parameters

param_informationEpsilon

Parameter Description: Information Epsilon

param_informationRates

Parameter Description: Information Rates

param_intersectionTest_Enrichment

Parameter Description: Intersection Test

param_intersectionTest_MultiArm

Parameter Description: Intersection Test

param_kappa

Parameter Description: Kappa

param_kMax

Parameter Description: Maximum Number of Stages

param_lambda_counts

Parameter Description: lambda for Counts

param_lambda1_counts

Parameter Description: lambda (1) for Counts

param_lambda1

Parameter Description: Lambda (1)

param_lambda2_counts

Parameter Description: lambda (2) for Counts

param_lambda2

Parameter Description: Lambda (2)

param_legendPosition

Parameter Description: Legend Position On Plots

param_maxInformation

Parameter Description: Maximum Information

param_maxNumberOfEventsPerStage

Parameter Description: Max Number Of Events Per Stage

param_maxNumberOfIterations

Parameter Description: Maximum Number Of Iterations

param_maxNumberOfSubjects_survival

Parameter Description: Maximum Number Of Subjects For Survival Endpoin...

param_maxNumberOfSubjects

Parameter Description: Maximum Number Of Subjects

param_maxNumberOfSubjectsPerStage

Parameter Description: Maximum Number Of Subjects Per Stage

param_median1

Parameter Description: Median (1)

param_median2

Parameter Description: Median (2)

param_minNumberOfEventsPerStage

Parameter Description: Min Number Of Events Per Stage

param_minNumberOfSubjectsPerStage

Parameter Description: Minimum Number Of Subjects Per Stage

param_niceColumnNamesEnabled

Parameter Description: Nice Column Names Enabled

param_nMax

Parameter Description: N_max

param_normalApproximation

Parameter Description: Normal Approximation

param_nPlanned

Parameter Description: N Planned

param_overdispersion_counts

Parameter Description: overdispersion for Counts

param_palette

Parameter Description: Palette

param_pi1_rates

Parameter Description: Pi (1) for Rates

param_pi1_survival

Parameter Description: Pi (1) for Survival Data

param_pi2_rates

Parameter Description: Pi (2) for Rates

param_pi2_survival

Parameter Description: Pi (2) for Survival Data

param_piecewiseSurvivalTime

Parameter Description: Piecewise Survival Time

param_plannedCalendarTime

Parameter Description: Planned Calendar Time

param_plannedEvents

Parameter Description: Planned Events

param_plannedSubjects

Parameter Description: Planned Subjects

param_plotPointsEnabled

Parameter Description: Plot Points Enabled

param_plotSettings

Parameter Description: Plot Settings

param_populations

Parameter Description: Populations

param_rValue

Parameter Description: R Value

param_seed

Parameter Description: Seed

param_selectArmsFunction

Parameter Description: Select Arms Function

param_selectPopulationsFunction

Parameter Description: Select Populations Function

param_showSource

Parameter Description: Show Source

param_showStatistics

Parameter Description: Show Statistics

param_sided

Parameter Description: Sided

param_slope

Parameter Description: Slope

param_stage

Parameter Description: Stage

param_stageResults

Parameter Description: Stage Results

param_stDev

Parameter Description: Standard Deviation

param_stDevH1

Parameter Description: Standard Deviation Under Alternative

param_stDevSimulation

Parameter Description: Standard Deviation for Simulation

param_stratifiedAnalysis

Parameter Description: Stratified Analysis

param_successCriterion

Parameter Description: Success Criterion

param_theta_counts

Parameter Description: theta for Counts

param_theta

Parameter Description: Theta

param_thetaH0

Parameter Description: Theta H0

param_thetaH1

Parameter Description: Effect Under Alternative

param_three_dots_plot

Parameter Description: "..." (optional plot arguments)

param_three_dots

Parameter Description: "..."

param_threshold

Parameter Description: Threshold

param_tolerance

Parameter Description: Tolerance

param_typeOfComputation

Parameter Description: Type Of Computation

param_typeOfDesign

Parameter Description: Type of Design

param_typeOfSelection

Parameter Description: Type of Selection

param_typeOfShape

Parameter Description: Type Of Shape

param_userAlphaSpending

Parameter Description: User Alpha Spending

param_varianceOption

Parameter Description: Variance Option

ParameterSet

Parameter Set

PerformanceScore

Performance Score

PiecewiseSurvivalTime

Piecewise Exponential Survival Time

plot.AnalysisResults

Analysis Results Plotting

plot.Dataset

Dataset Plotting

plot.EventProbabilities

Event Probabilities Plotting

plot.NumberOfSubjects

Number Of Subjects Plotting

plot.ParameterSet

Parameter Set Plotting

plot.SimulationResults

Simulation Results Plotting

plot.StageResults

Stage Results Plotting

plot.SummaryFactory

Summary Factory Plotting

plot.TrialDesign

Trial Design Plotting

plot.TrialDesignPlan

Trial Design Plan Plotting

plot.TrialDesignSet

Trial Design Set Plotting

plot.TrialDesignSummaries

Plot Trial Design Summaries

PlotSettings

Plot Settings

PowerAndAverageSampleNumberResult

Power and Average Sample Number Result

print.Dataset

Print Dataset Values

print.FieldSet

Print Field Set Values

print.ParameterSet

Print Parameter Set Values

print.SimulationResults

Print Simulation Results

print.SummaryFactory

Summary Factory Printing

print.TrialDesignCharacteristics

Trial Design Characteristics Printing

print.TrialDesignSummaries

Print Trial Design Summaries

printCitation

Print Citation

readDataset

Read Dataset

readDatasets

Read Multiple Datasets

resetLogLevel

Reset Log Level

rpact

rpact - Confirmatory Adaptive Clinical Trial Design and Analysis

setLogLevel

Set Log Level

setOutputFormat

Set Output Format

SimulationResults

Class for Simulation Results

SimulationResultsCountData

Class for Simulation Results Count Data

SimulationResultsEnrichmentMeans

Class for Simulation Results Enrichment Means

SimulationResultsEnrichmentRates

Class for Simulation Results Enrichment Rates

SimulationResultsEnrichmentSurvival

Class for Simulation Results Enrichment Survival

SimulationResultsMeans

Class for Simulation Results Means

SimulationResultsMultiArmMeans

Class for Simulation Results Multi-Arm Means

SimulationResultsMultiArmRates

Class for Simulation Results Multi-Arm Rates

SimulationResultsMultiArmSurvival

Class for Simulation Results Multi-Arm Survival

SimulationResultsRates

Class for Simulation Results Rates

SimulationResultsSurvival

Class for Simulation Results Survival

StageResults

Basic Stage Results

StageResultsEnrichmentMeans

Stage Results Enrichment Means

StageResultsEnrichmentRates

Stage Results Enrichment Rates

StageResultsEnrichmentSurvival

Stage Results Enrichment Survival

StageResultsMeans

Stage Results of Means

StageResultsMultiArmMeans

Stage Results Multi Arm Means

StageResultsMultiArmRates

Stage Results Multi Arm Rates

StageResultsMultiArmSurvival

Stage Results Multi Arm Survival

StageResultsRates

Stage Results of Rates

StageResultsSurvival

Stage Results of Survival Data

summary.AnalysisResults

Analysis Results Summary

summary.Dataset

Dataset Summary

summary.ParameterSet

Parameter Set Summary

summary.TrialDesignSet

Trial Design Set Summary

SummaryFactory

Summary Factory

test_plan_section

Test Plan Section

testPackage

Test Package

TrialDesign

Basic Trial Design

TrialDesignCharacteristics

Trial Design Characteristics

TrialDesignConditionalDunnett

Conditional Dunnett Design

TrialDesignFisher

Fisher Design

TrialDesignGroupSequential

Group Sequential Design

TrialDesignInverseNormal

Inverse Normal Design

TrialDesignPlan

Basic Trial Design Plan

TrialDesignPlanCountData

Trial Design Plan Count Data

TrialDesignPlanMeans

Trial Design Plan Means

TrialDesignPlanRates

Trial Design Plan Rates

TrialDesignPlanSurvival

Trial Design Plan Survival

TrialDesignSet

Class for trial design sets.

utilitiesForPiecewiseExponentialDistribution

The Piecewise Exponential Distribution

utilitiesForSurvivalTrials

Survival Helper Functions for Conversion of Pi, Lambda, Median

writeDataset

Write Dataset

writeDatasets

Write Multiple Datasets

Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2016) <doi:10.1007/978-3-319-32562-0>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.

  • Maintainer: Friedrich Pahlke
  • License: LGPL-3
  • Last published: 2024-09-27