parse_kraken_report function

Parse kraken report file

parse_kraken_report(kraken_report, intermediate_ranks = TRUE, mpa = FALSE)

Arguments

• kraken_report: The path to kraken report file.
• intermediate_ranks: A bool indicates whether to include non-traditional taxonomic ranks in output.
• mpa: A bool indicates whether to use mpa-style.

Returns

A polars DataFrame .

See Also

https://github.com/DerrickWood/kraken2/blob/master/docs/MANUAL.markdown