rsynthbio3.0.2 package

Synthesize Bio API Wrapper

API_BASE_URL

API Base URL

clear_synthesize_token

Clear Synthesize Bio API Token

DEFAULT_POLL_INTERVAL_SECONDS

Default Poll Interval

DEFAULT_POLL_TIMEOUT_SECONDS

Default Poll Timeout

DEFAULT_TIMEOUT

Default Timeout

extract_expression_data

Extract Gene Expression Data from API Response

get_json

Get JSON from URL

get_valid_modalities

Get Valid Modalities

get_valid_modes

Get Valid Modes

get_valid_query

Get Valid Query Example

has_synthesize_token

Check if Synthesize Bio API Token is Set

load_synthesize_token_from_keyring

Load Synthesize Bio API Token from Keyring

log_cpm

Log CPM Transformation

MODEL_MODALITIES

Model Modalities

MODEL_MODES

Model Modes

poll_model_query

Poll Model Query

predict_query

Predict Gene Expression

resolve_api_slug

Resolve API Slug

set_synthesize_token

Set Synthesize Bio API Token

start_model_query

Start Model Query

validate_modality

Validate Query Modality

validate_query

Validate Query Structure

Download source packageRead PDF manual

Access Synthesize Bio models from their API <https://app.synthesize.bio/> using this wrapper that provides a convenient interface to the Synthesize Bio API, allowing users to generate realistic gene expression data based on specified biological conditions. This package enables researchers to easily access AI-generated transcriptomic data for various modalities including bulk RNA-seq, single-cell RNA-seq, microarray data, and more.

  • Maintainer: Candace Savonen
  • License: MIT + file LICENSE
  • Last published: 2025-10-29

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