ruv_shiny function

RUV Shiny App

A Shiny App that allows quick exploration of a dataset using RUV methods.

ruv_shiny(Y, rowinfo, colinfo, options = list(port = 3840))

Arguments

• Y: The data matrix. Rows are observations and columns are features (e.g. genes).
• rowinfo: A dataframe of information about the observations. Should have the same number of rows as Y. Should contain at least one column that can be used as either a factor of interest or to define replicates.
• colinfo: A dataframe of information about the observations. Should have the same number of rows as Y. Should contain at least one column that is a logical vector that can be used to define negative controls.
• options: A list of options to pass to the shinyApp function.

Returns

None. Calls shinyApp.

Author(s)

Johann Gagnon-Bartsch