sMSROC0.1.3 package

Assessment of Diagnostic and Prognostic Markers

auc_ci_boot

Confidence intervals for the AUC (bootstrap)

auc_ci_emp

Confidence intervals for the AUC (empirical variance estimation)

auc_ci_nvar

Confidence intervals for the AUC (theoretical variance estimation)

check_ci_cl

Check confidence level for AUC's confidence intervals

check_conf_int

Checks for parameters to compute the confidence intervals for the AUC

check_grid

Check grid

check_marker_binout

Checks of diagnosis scenarios

check_marker_timeic

Check of prognosis scenarios under interval censorship

check_marker_timerc

Check of prognosis scenarios under right censorship

check_meth

Check the method for estimating the predictive model

check_nboots

Check number of bootstrap samples

check_ncpus

Check number of CPUs

check_tim

Check tim

check_type_outcome

Check the type of scenario (diagnosis/prognosis)

computeROC

Weighted empirical ROC curve estimator

conf_int_print

AUC and confidence intervals

evol_auc

Evolution of the AUCs

explore_plot

Graphical exploratory data analysis

explore_table

Exploratory data analysis

pred_model_binout

Predictive model estimation in diagnosis scenarios

pred_model_emp

Predictive model (naive estimation)

pred_model_timeic

Predictive model in prognosis scenarios (I)

pred_model_timerc

Predictive model in prognosis scenarios (II)

print.sMSROC

Print sMSROC

probs_pred

Plot of the predictive model

sMS_binout

sMS estimator for diagnostic biomarkers

sMS_timeic

sMS estimator for prognostic biomarkers and interval censoring

sMS_timerc

sMS estimator for prognostic biomarkers and right censorship

sMSROC_plot

Plot of the sMS ROC curve estimate

sMSROC

sMS ROC curve estimator computation

variance_probs

Variance of the predictive model

Provides estimations of the Receiver Operating Characteristic (ROC) curve and the Area Under the Curve (AUC) based on the two-stages mixed-subjects ROC curve estimator (Diaz-Coto et al. (2020) <doi:10.1515/ijb-2019-0097> and Diaz-Coto et al. (2020) <doi:10.1080/00949655.2020.1736071>).

  • Maintainer: Susana Diaz-Coto
  • License: GPL
  • Last published: 2025-10-20