Analysis of Small RNA Expression Changes in Hybrid Plants
Generate the base frequency plot of miRNA
Filitering low expressed miRNAs based on count: Countfiliter
Classification for 12 expression patterns
Genetic effects analysis: Twelve bins of expression analysis (method2)
Genetic effects analysis of miRNA: |d/a| (method 1)
Generate the sRNA length distribution plot
Generate the data of miRNA base frequence in each position
Species specific expression analysis: miVennData
Species specific expression analysis: miVennPlot
Differential expression analysis
Filitering low expressed miRNAs based on RPM: Rpmfiliter
sRNAGenetic: Analysis of Small RNA Expression Changes in Hybrid Plants
Generate the data of sRNA length distribution
The most important function of the R package is the genetic effects analysis of small RNA in hybrid plants via two methods, and at the same time, it provides various forms of graph related to data characteristics and expression analysis. In terms of two classification methods, one is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the small RNA in progeny with the expression level in the parent species.