Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data
CNV Calling from Sequencing Data
Construct Data Frame for CNV Inference with NGS Data
Visualize Genome-Wide SCNA Profile in 2D Cluster Plot
Visualize Segmentation Results for Diagnosis
GC Content Adjustment
Visualize Genome-Wide SCNA Profile
Internal Functions and Data
Joint Segmentation on log2ratio and log2mBAF Dimensions
Merge Adjacent Segments
CNV Analysis Pipeline for WGS and WES Data
Gene Annotation
Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array...
Construct Data Frame for CNV Inference with SNP Array Data
CNV Analysis Pipeline for SNP array Data
Refine Segment Boundaries
Covert VCF File to A Data Frame
Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.