sads0.6.3 package

Maximum Likelihood Models for Species Abundance Distributions

ARN82

Biomass of marine animals in colonizing experiments in Baltic Sea

coverpred-class

Class "coverpred" for predicted values for abundance classes

coverpred

~~ Methods for Function coverpred in Package sads ~~

dbs

MacArthur's Broken-stick distribution

dgs

Geometric series distribution

distr

Continuous or discrete distributions

dls

Fisher's Log-series distribution

dman

Zipf-Mandelbrodt distribution

dmzsm

Metacommunity zero-sum multinomial distribution

dpareto

Pareto distribution

dpoig

Compound Poisson-gamma distribution

dpoilog

Poisson-lognormal distribution

dpoix

Compound Poisson-Exponential distribution

dpowbend

Puyeo's Power-bend discrete distribution

dpower

Power discrete distribution

dtrunc

Left-truncation of density, probability and quantile of distributions

dvolkov

Neutral Biodiversity Theory distribution by Volkov et al.

dzipf

Zipf distribution

fitrad-class

Class "fitrad" for maximum likelihood fitting of species rank-abunda...

fitrad

ML fitting of species rank-abundance distributions

fitsad-class

Class "fitsad" for maximum likelihood fitting of species abundance d...

fitsad

ML fitting of species abundance distributions

fitsadC-class

Class "fitsadC" for maximum likelihood fitting of species abundance ...

fitsadC

ML fitting of species abundance distributions to data pooled in abunda...

ICtab

Compute table of information criteria and auxiliary info

likelregions-class

Class "likelregions" for likelihood profiles of maximum likelihood f...

octav-class

Class "octav" for frequencies in abundance octaves

octav

Frequencies of species in octaves

octavpred

Predicted frequencies of species in octaves

plotprofmle

Log-likelihood profiles at original scale

ppsad

Percentile-percentile plots for species-abundance and rank-abundance m...

pred.logser

Predicted number of species by Fisher's Logseries

qqsad

Quantile-quantile plots for species-abundance and rank-abundance model...

rad-class

Class "rad" for rank-abundance data

rad

Rank-abundance data frame

radpred

Predicted ranked abundance of species

rsad

Sampling from a species abundance distribution

sads-package

tools:::Rd_package_title("sads")

stats

Standard stats methods

summary.sads-class

Summary for fitsad/fitrad calls

trueLL

True likelihood for continuous variables

updatesad

Updating of MLE fits by profiling

Maximum likelihood tools to fit and compare models of species abundance distributions and of species rank-abundance distributions.

  • Maintainer: Paulo I. Prado
  • License: GPL-2
  • Last published: 2024-01-16