Management Strategy Evaluation for Salmon Species
All-H Analyzer
Class "Bio"
Calculate equilibrium quantities with life history groups
Proportion wild spawners
Reference points
Smolt production
Ricker reference points
Calculate abundance from density-dependent mortality
Convert density-dependent survival parameters
Check inputs to SOM object
Estimation function for conditioning model
Convert conditioning model to operating model
Compare simulation runs
Fit conditioning model to historical data
Calculate F from harvest rate
Class "Habitat"
Harvest component of operating model
Class "Harvest"
Class "Hatchery"
Class "Historical"
Decision table of performance metrics
Plot life history groups and release strategies
Plot core output from salmonMSE
Tradeoff figure
Example performance metrics
Conditioning model markdown report
Generate markdown reports
Environment to store salmon specific variables, e.g, fitness, during t...
Internal salmonMSE functions for converting operating model inputs and...
Run salmonMSE
Update natural mortality of juveniles
Class "SHist"
Predict smolt production
Class "SMSE"
Class "SOM"
Simulation tools to evaluate the long-term effects of salmon management strategies, including a combination of habitat, harvest, and habitat actions. The stochastic age-structured operating model accommodates complex life histories, including freshwater survival across early life stages, juvenile survival and fishery exploitation in the marine life stage, partial maturity by age class, and fitness impacts of hatchery programs on natural spawning populations. 'salmonMSE' also provides an age-structured conditioning model to develop operating models fitted to data.
Useful links