cellTypeGOCorr function

calculate correlation between cell types represented by scaled GO, per-species

cellTypeGOCorr(cell_type_go, corr_method = "pearson")

Arguments

• cell_type_go: cell type GO table calculated via getCellTypeGO
• corr_method: correlation method, choose among "pearson", "kendall", "spearman", default 'pearson'

Returns

a dataframe with correlation between cell types

Examples

library(scGOclust)
library(httr)
httr::set_config(httr::config(ssl_verifypeer = FALSE))
data(mmu_tbl)
data(mmu_subset)
go_seurat_obj = makeGOSeurat(ensembl_to_GO = mmu_tbl,
 seurat_obj = mmu_subset,
 feature_type = "external_gene_name")

cell_type_go = getCellTypeGO(go_seurat_obj = go_seurat_obj, cell_type_co = "cell_type_annotation")

cellTypeGOCorr(cell_type_go = cell_type_go, corr_method = "pearson")