scSorter0.0.2 package

Implementation of 'scSorter' Algorithm

cost_func

Cost Function

data_preprocess

Preprocess Data

design_matrix_builder

Design Matrix Builder

scSorter

scSorter

update_C

Update Cluster

update_func

Update Function

update_mu

Mu Update

xfindvariable_genes

Select Highly Variable Genes

xnormalize_scData

Normalize scRNA-seq Data

Download source packageRead PDF manual

Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.

  • Maintainer: Jun Li
  • License: GPL-3
  • Last published: 2021-03-17