seAMLess0.1.1 package

A Single Cell Transcriptomics Based Deconvolution Pipeline for Leukemia

cli

Command Line Interface for seAMLess

seAMLess

Given the count matrices of bulk-RNA samples, this function deconvolut...

ternaryPlot

Given the immune compositions (ICs) of bulk-RNA samples, this function...

verboseFn

verboseFn

wrangleMat

removes ERCC peaks and duplicated genes

Download source packageRead PDF manual

Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors. Published in <https://www.nature.com/articles/s41698-024-00596-9>.