Sequence Manipulation Utilities
bam2DNAStringSet
bam2DNAStringSet2
bs_aln
bs_filter
bs_hamming
bs_rename
consensus
download_genbank
fa_combine
fa_to_interleaved
fa_filter
fa_rename
fa_write
fas2phy
gb_read
get_id
read sequence alignment file
ncbi_fa_read
phy_read
phy_write
phy2fas
renameTXT
replaceInside
seqlen
seqmagick: Sequence Manipulation Utilities
Tools for reading and writing biological sequences in multiple formats, including 'FASTA', 'PHYLIP', 'CLUSTAL', 'STOCKHOLM', 'MEGA' and 'GenBank'. Supports interleaved and sequential layouts where applicable, converts between formats, and manipulates sequence sets (e.g., filtering by patterns and computing consensus sequences from alignments). Also includes functions to download nucleotide records from NCBI by accession.