serocalculator1.3.0 package

kinetics of the antibody (ab) response (power function decay)

Load antibody decay curve parameter

Load noise parameters

Load a cross-sectional antibody survey data set

graph antibody decay curves by antigen isotype

Plot distribution of antibodies

Plot seroincidence.by log-likelihoods

Plot the log-likelihood curve for the incidence rate estimate

Plot method for summary.seroincidence.by objects

Check the formatting of a cross-sectional antibody survey dataset.

Convert a data.frame (or tibble) into a multidimensional array

Calculate negative log-likelihood

Estimate Seroincidence

Find the maximum likelihood estimate of the incidence rate parameter

Calculate negative log-likelihood (deviance) for one antigen:isotype p...

Calculate negative log-likelihood (deviance) for one antigen:isotype p...

Calculate negative log-likelihood (deviance)

Graph log-likelihood of data

Graph estimated antibody decay curve

extract a row from longitudinal parameter set

Calculate log-likelihood

Load antibody decay curve parameter samples

Load noise parameters

Load a cross-sectional antibody survey data set

Calculate log-likelihood

generate random sample from baseline distribution

generate random sample from baseline distribution

Graph an antibody decay curve model

Print Method for seroincidence.by Object

Print Method for seroincidence Object

Print Method for Seroincidence Summary Object

Objects exported from other packages

extract a row from longitudinal parameter set

Get path to an example file

Estimating Infection Rates from Serological Data

Simulate multiple data sets

Simulate a cross-sectional serosurvey with noise

collect cross-sectional data

simulate antibody kinetics of y over a time interval

Extract strata from an object

Extract the Strata attribute from an object, if present

Split data by stratum

Extract or replace parts of a seroincidence.by object

Summarize cross-sectional antibody survey data

Summary Method for "seroincidence.by" Objects

Summarizing fitted seroincidence models

Warn about missing stratifying variables in a dataset