Predict Presence of Signal Peptides
Adds k-mer hidden state to signalHsmm model
Compute most probable path with extended Viterbi algorithm.
Localize n-, h- and c-region in signal peptide
GUI for signalHsmm
hsmm_pred class
hsmm_pred_list class
Protein test
Plot single signalHsmm prediction
Convert list of signalHsmm predictions
Predict sighsmm_model object
Read sequences from .txt file
Read data from UniProt database
Predict presence of signal peptide in protein
signalHsmm - prediction of signal peptides
Summarize single signalHsmm prediction
Summarize list of signalHsmm predictions
Train sighsmm_model object
Predicts the presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed from both the command line and GUI.