get_parameters_haystack function

Function that decides most of the parameters that will be used during the "Haystack" analysis.

get_parameters_haystack(x, y, high.resolution = FALSE)

Arguments

• x: x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE)
• y: y-axis coordinates of cells in a 2D representation
• high.resolution: Logical: should high resolution be used? Default is FALSE.

Returns

A list containing various parameters to use in the analysis.