kmeans_haystack_raw function

Function for k-means clustering of genes according to their distribution on a 2D plot.

kmeans_haystack_raw(x, y, detection, genes, k, ...)

Arguments

• x: x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE)
• y: y-axis coordinates of cells in a 2D representation
• detection: A logical matrix showing which genes (rows) are detected in which cells (columns)
• genes: A set of genes (of the 'detection' data) which will be clustered.
• k: The number of clusters to return.
• ...: Additional parameters which will be passed on to the kmeans function.

Returns

An object of class kmeans, describing a clustering into 'k' clusters