skewlmm1.1.2 package

Scale Mixture of Skew-Normal Linear Mixed Models

residuals

Extract model residuals from smn.lmm and smsn.lmm objects

summary.SMNCens

Summary of a smn.clmm object

summary.SMSN

Summary of a smsn.lmm object

update

Update for SMSN/SMN/SMNclmm objects

weight_plot

Weight plot for smn.lmm or smsn.lmm object

acfresid

Autocorrelation function for smn.lmm or smsn.lmm residuals

boot_ci

Extract confidence intervals from lmmBoot object

boot_par

Parametric bootstrap for SMSN/SMN objects

coef

Extract coefficients from smsn.lmm, smn.lmm and smn.clmm objects

fitted.SMSN

Extract smsn.lmm fitted values

fixef

Extract estimated fixed effects from smsn.lmm, smn.lmm and smn.clmm ob...

formula

Formula from an smn.lmm and smsn.lmm models

plot.acfresid

Plot ACF for smn.lmm or smsn.lmm residuals

nobs

Extract the number of observations from smn.lmm and smsn.lmm fitted mo...

confint

Computes confidence intervals from smn.lmm and smsn.lmm fitted models

criteria

Extracts criteria for model comparison of SMSN/SMN/SMNclmm objects

errorVar

Error scale matrix associated with times

fitted.SMN

Extract smn.lmm fitted values

fitted.SMNCens

Extract smn.clmm fitted values

healy.plot

Healy-type plot from a smn.lmm or smsn.lmm object

lmmControl

Control options for smsn.lmm(), smn.lmm() and smn.clmm()

logLik

Log-likelihood of an smn.lmm and smsn.lmm models

lr.test

Likelihood-ratio test for SMSN/SMN objects

mahalDist

Mahalanobis distance from a smn.lmm or smsn.lmm object

mahalDist.SMNCens

Mahalanobis distance from a smn.clmm object

plot.mahalDist

Plot Mahalanobis distance for a fitted smn.lmm or smsn.lmm

plot.mahalDist.SMNCens

Plot Mahalanobis distance for a fitted smn.clmm

plot

Plot a smn.lmm or smsn.lmm object

plot.SMNCens

Plot a smn.clmm object

predict.SMN

Prediction of future observations from an smn.lmm object

predict.SMNCens

Prediction of future observations from an smn.clmm object

predict.SMSN

Prediction of future observations from an smsn.lmm object

print.SMN

Print a smn.lmm object

print.SMNCens

Print a smn.clmm object

print.SMSN

Print a smsn.lmm object

ranef

Extract random effects from smsn.lmm, smn.lmm and smn.clmm objects

residuals.SMNCens

Extract model residuals from smn.clmm objects

rsmsn.clmm

Generate data from SMSN-CLMM with censored responses

rsmsn.lmm

Generate data from SMSN-LMM

sigma

Residual standard deviation from smn.lmm and smsn.lmm objects

smn.clmm

ML estimation of scale mixture of normal linear mixed models with cens...

smn.lmm

ML estimation of scale mixture of normal linear mixed models

smsn.lmm

ML estimation of scale mixture of skew-normal linear mixed models

summary.SMN

Summary of a smn.lmm object

It fits scale mixture of skew-normal linear mixed models using either an expectation–maximization (EM) type algorithm or its accelerated version (Damped Anderson Acceleration with Epsilon Monotonicity, DAAREM), including some possibilities for modeling the within-subject dependence. Details can be found in Schumacher, Lachos and Matos (2021) <doi:10.1002/sim.8870>.

  • Maintainer: Fernanda L. Schumacher
  • License: MIT + file LICENSE
  • Last published: 2024-12-15