smer0.0.2 package

Sparse Marginal Epistasis Test

approximate_memory_requirements

Estimate Memory Requirements for SME Routine

create_hdf5_file

Create an HDF5 File

read_hdf5_dataset

Read Dataset from an HDF5 File

simulate_traits

Simulate Quantitative Traits from PLINK Genotypes

sme

Sparse Marginal Epistasis Test (SME)

write_hdf5_dataset

Write Data to an HDF5 Dataset

Download source packageRead PDF manual

The Sparse Marginal Epistasis Test is a computationally efficient genetics method which detects statistical epistasis in complex traits; see Stamp et al. (2025, <doi:10.1101/2025.01.11.632557>) for details.

  • Maintainer: Julian Stamp
  • License: MIT + file LICENSE
  • Last published: 2025-08-22

Useful links