Soil Food Web Analysis
A function to calculate the nitrogen surplus or deficit each species g...
A function to compile the food web from simple data inputs
Calculate the strength of stability as smin.
A function to calculate the inputs and outputs at equilibrium and prin...
Function used inside the calc_smin function
A function that identifies cannibalism and mutual feeding
A function check the community for errors before it is used in calcula...
Check the carbon flux equilibrium output by comana.
A utility function to calculate the consumption rate of each species o...
A function to simulate the dynamics over time wrapping getPARAMS and f...
A function to calculate carbon and nitrogen fluxes in the food web.
A function to combine trophic species.
A function to correct the diet of trophic species.
A function to correct stoichiometry dynamically
Correct stoichiometry
Decomposition rates and effect of individual organisms
A function to simulation the food webs away from equilibrium.
A function to get the parameters for a food web model.
Calculate Jacob's index.
Add node to the community
Parameter uncertainty returns community with new parameters drawn from...
A function to fix production efficiency.
Remove nodes from community.
Rename a node in a community.
A function to rescale a vector.
Calculates the stability of the food web
A function to run the stability analysis using the numerical simulatio...
Calculates the trophic level for each tropospecies
Sorts the trophic levels from lowest to highest
Direct and indirect contributions to mineralizations
Analyzing soil food webs or any food web measured at equilibrium. The package calculates carbon and nitrogen fluxes and stability properties using methods described by Hunt et al. (1987) <doi:10.1007/BF00260580>, de Ruiter et al. (1995) <doi:10.1126/science.269.5228.1257>, Holtkamp et al. (2011) <doi:10.1016/j.soilbio.2010.10.004>, and Buchkowski and Lindo (2021) <doi:10.1111/1365-2435.13706>. The package can also manipulate the structure of the food web as well as simulate food webs away from equilibrium and run decomposition experiments.