copy_ss3models function

Copy the operating and estimation models and create a folder structure

copy_ss3models(model_dir, scenarios, iterations = 1:100, type = c("om",
  "em"))

Arguments

• model_dir: A directory containing the operating or estimation model. Each folder should be named according to a scenario ID. (See the vignette vignette("ss3sim-vignette") or get_caseargs for details on the scenario ID format.)
• scenarios: Which scenarios to copy to. Supply a vector of character elements.
• iterations: A numeric vector of the iterations to copy to. The function will create the folders as needed.
• type: Are you copying operating or estimation models? This affects whether the model folder gets named "om" or "em"

Returns

An invisible boolean for whether that iteration already existed. A set of nested folders starting with the scenario ID, then the iterations, then "om" or "em", and then the SS model files.

Examples

# Locate the package data:
om_folder <- system.file("extdata", "models", "cod-om", package =
  "ss3sim")

# Copy the operating model:
copy_ss3models(model_dir = om_folder, type = "om", iterations =
  1:3, scenarios = "D0-F0-testing")
# Now look at your working directory in your file system

# Copy the estimation model with two scenario IDs:
copy_ss3models(model_dir = om_folder, type = "em", iterations = 1:2,
  scenarios = c("D1-F0-testing", "D2-F0-testing"))
# (Note that all the scenario argument does here is affect the
# folder names.)

# Clean up:
unlink("D0-F0-testing", recursive = TRUE)
unlink("D1-F0-testing", recursive = TRUE)
unlink("D2-F0-testing", recursive = TRUE)

Author(s)

Sean Anderson, Kelli Johnson