Single Sample Directional Gene Set Analysis
Function to Calculate the Average of Gene Expressions
Function to Check if Gene IDs in the Input Gene Data Match Well When D...
Function to Check if Gene IDs in the Input Gene Data Match Well
Function to Check if Genes in Gene Sets Have Missing Information in Da...
Function to Check if 100% of Genes in Gene Sets Have Missing Informati...
Function to Check if Genes in Gene Sets Have Missing Information in Da...
Function to Calculate Median of Gene Expressions
Single Sample Directional Gene Set Analysis Using Individual Weighted ...
Single Sample Directional Gene Set Analysis (ssdGSA)
Function to Calculate Single Sample Gene Set Scores without Direction ...
Function to Transform ENSEMBL ID to ENTREZ ID
A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed. Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.