ssdtools2.1.0 package

Species Sensitivity Distributions

augment.fitdists

Augmented Data from fitdists Object

autoplot.fitdists

Plot a fitdists Object

coef.fitdists

Turn a fitdists Object into a Tidy Tibble

comma_signif

Comma and Significance Formatter

dgompertz

Gompertz Probability Density

dlgumbel

Log-Gumbel (Inverse Weibull) Probability Density

estimates.fitdists

Estimates for fitdists Object

geom_hcintersect

Species Sensitivity Hazard Concentration Intersection

geom_ssd

Species Sensitivity Data Points

geom_ssdpoint

Species Sensitivity Data Points

geom_ssdsegment

Species Sensitivity Censored Segments

geom_xribbon

Ribbon on X-Axis

glance.fitdists

Get a tibble summarizing each distribution

is_censored

Is Censored

is.fitdists

Is fitdists Object

params

Parameter Descriptions for ssdtools Functions

pgompertz

Cumulative Distribution Function for Gompertz Distribution

plgumbel

Cumulative Distribution Function for Log-Gumbel Distribution

predict.fitburrlioz

Predict Hazard Concentrations of fitburrlioz Object

predict.fitdists

Predict Hazard Concentrations of fitdists Object

qgompertz

Quantile Function for Gompertz Distribution

qlgumbel

Quantile Function for Log-Gumbel Distribution

reexports

Objects exported from other packages

rgompertz

Random Generation for Gompertz Distribution

rlgumbel

Random Generation for log-Gumbel Distribution

scale_colour_ssd

Discrete color-blind scale for SSD Plots

ssd_censor_data

Censor Data

ssd_data

Data from fitdists Object

ssd_dists_all

All Species Sensitivity Distributions

ssd_dists_bcanz

BCANZ Distributions

ssd_dists

Species Sensitivity Distributions

ssd_e

Default Parameter Estimates

ssd_ecd_data

Empirical Cumulative Density for Species Sensitivity Data

ssd_ecd

Empirical Cumulative Density

ssd_exposure

Proportion Exposure

ssd_fit_bcanz

Fit BCANZ Distributions

ssd_fit_burrlioz

Fit Burrlioz Distributions

ssd_fit_dists

Fit Distributions

ssd_gof

Goodness of Fit

ssd_hc_bcanz

BCANZ Hazard Concentrations

ssd_hc_burrlioz

Hazard Concentrations for Burrlioz Fit

ssd_hc

Hazard Concentrations for Species Sensitivity Distributions

ssd_hp_bcanz

BCANZ Hazard Proportion

ssd_hp

Hazard Proportion

ssd_is_censored

Is Censored

ssd_label_comma

Label numbers with significant digits and comma

ssd_licensing_md

Licensing Markdown

ssd_match_moments

Match Moments

ssd_min_pmix

Calculate Minimum Proportion in Mixture Models

ssd_p

Cumulative Distribution Function

ssd_pal

Color-blind Palette for SSD Plots

ssd_plot_cdf

Plot Cumulative Distribution Function (CDF)

ssd_plot_cf

Cullen and Frey Plot

ssd_plot_data

Plot Species Sensitivity Data

ssd_plot

Plot Species Sensitivity Data and Distributions

ssd_q

Quantile Function

ssd_r

Random Number Generation

ssd_sort_data

Sort Species Sensitivity Data

ssd_wqg_bc

Water Quality Guideline for British Columbia

ssd_wqg_burrlioz

Water Quality Guideline for Burrlioz

ssdtools-ggproto

ggproto Classes for Plotting Species Sensitivity Data and Distribution...

ssdtools-package

ssdtools: Species Sensitivity Distributions

stat_ssd

Plot Species Sensitivity Data

subset.fitdists

Subset fitdists Object

tidy.fitdists

Turn a fitdists Object into a Tibble

Species sensitivity distributions are cumulative probability distributions which are fitted to toxicity concentrations for different species as described by Posthuma et al.(2001) <isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to fit distributions such as the gamma, log-logistic, log-normal and log-normal log-normal mixture. Multiple distributions can be averaged using Akaike Information Criteria. Confidence intervals on hazard concentrations and proportions are produced by parametric bootstrapping.

  • Maintainer: Joe Thorley
  • License: Apache License (== 2.0) | file LICENSE
  • Last published: 2024-10-21