survival3.7-0 package

Survival Analysis

myeloma

Survival times of patients with multiple myeloma

neardate

Find the index of the closest value in data set 2, for each entry in d...

nsk

Natural splines with knot heights as the basis.

ovarian

Ovarian Cancer Survival Data

xtfrm.Surv

Sorting order for Surv objects

veteran

Veterans' Administration Lung Cancer study

aareg

Aalen's additive regression model for censored data

aeqSurv

Adjudicate near ties in a Surv object

aggregate.survfit

Average survival curves

agreg.fit

Cox model fitting functions

aml

Acute Myelogenous Leukemia survival data

anova.coxph

Analysis of Deviance for a Cox model.

cch

Fits proportional hazards regression model to case-cohort data

attrassign

Create new-style "assign" attribute

basehaz

Alias for the survfit function

bladder

Bladder Cancer Recurrences

blogit

Bounded link functions

brier

Compute the Brier score for a Cox model

cgd0

Chronic Granulotomous Disease data

cipoisson

Confidence limits for the Poisson

clogit

Conditional logistic regression

cluster

Identify clusters.

colon

Chemotherapy for Stage B/C colon cancer

concordance

Compute the concordance statistic for data or a model

concordancefit

Compute the concordance

cox.zph

Test the Proportional Hazards Assumption of a Cox Regression

coxph.control

Ancillary arguments for controlling coxph fits

coxph.detail

Details of a Cox Model Fit

coxph.object

Proportional Hazards Regression Object

coxph

Fit Proportional Hazards Regression Model

coxph.wtest

Compute a quadratic form

coxphms.object

Multi-state Proportional Hazards Regression Object

coxsurv.fit

A direct interface to the `computational engine' of survfit.coxph

dsurvreg

Distributions available in survreg.

finegray

Create data for a Fine-Gray model

frailty

Random effects terms

gbsg

Breast cancer data sets used in Royston and Altman (2013)

hoel

Mouse cancer data

is.ratetable

Verify that an object is of class ratetable.

kidney

Kidney catheter data

levels.Surv

Return the states of a multi-state Surv object

lines.survfit

Add Lines or Points to a Survival Plot

logLik.coxph

logLik method for a Cox model

lung

NCCTG Lung Cancer Data

mgus

Monoclonal gammopathy data

mgus2

Monoclonal gammopathy data

model.frame.coxph

Model.frame method for coxph objects

model.matrix.coxph

Model.matrix method for coxph models

myeloid

Acute myeloid leukemia

pbcseq

Mayo Clinic Primary Biliary Cirrhosis, sequential data

plot.aareg

Plot an aareg object.

plot.cox.zph

Graphical Test of Proportional Hazards

plot.survfit

Plot method for survfit objects

predict.coxph

Predictions for a Cox model

predict.survreg

Predicted Values for a `survreg' Object

rats

Rat treatment data from Mantel et al

print.aareg

Print an aareg object

print.summary.coxph

Print method for summary.coxph objects

print.summary.survexp

Print Survexp Summary

print.summary.survfit

Print Survfit Summary

print.survfit

Print a Short Summary of a Survival Curve

pseudo

Pseudo values for survival.

pspline

Smoothing splines using a pspline basis

pyears

Person Years

quantile.survfit

Quantiles from a survfit object

ratetable

Allow ratetable() terms in a model

ratetableDate

Convert date objects to ratetable form

rats2

Rat data from Gail et al.

residuals.coxph

Calculate Residuals for a `coxph' Fit

residuals.survfit

IJ residuals from a survfit object.

residuals.survreg

Compute Residuals for `survreg' Objects

ridge

Ridge regression

rotterdam

Breast cancer data set used in Royston and Altman (2013)

royston

Compute Royston's D for a Cox model

rttright

Compute redistribute-to-the-right weights

stanford2

More Stanford Heart Transplant data

statefig

Draw a state space figure.

strata

Identify Stratification Variables

summary.aareg

Summarize an aareg fit

summary.coxph

Summary method for Cox models

summary.pyears

Summary function for pyears objecs

summary.survexp

Summary function for a survexp object

summary.survfit

Summary of a Survival Curve

Surv

Create a Survival Object

Surv2

Create a survival object

Surv2data

Convert data from timecourse to (time1,time2) style

survcheck

Checks of a survival data set

survcondense

Shorten a (time1, time2) survival dataset

survdiff

Test Survival Curve Differences

survexp.fit

Compute Expected Survival

survexp.object

Expected Survival Curve Object

survexp.us

Census Data Sets for the Expected Survival and Person Years Functions

survfit.coxph

Compute a Survival Curve from a Cox model

survfit.formula

Compute a Survival Curve for Censored Data

survfit.matrix

Create Aalen-Johansen estimates of multi-state survival from a matrix ...

survfit.object

Survival Curve Object

survfit

Create survival curves

survfit0

Convert the format of a survfit object.

survfitcoxph.fit

A direct interface to the `computational engine' of survfit.coxph

survival-deprecated

Deprecated functions in package survival

survreg.object

Parametric Survival Model Object

survival-internal

Internal survival functions

Survmethods

Methods for Surv objects

survobrien

O'Brien's Test for Association of a Single Variable with Survival

survreg.control

Package options for survreg and coxph

survreg.distributions

Parametric Survival Distributions

survreg

Regression for a Parametric Survival Model

survregDtest

Verify a survreg distribution

survSplit

Split a survival data set at specified times

tcut

Factors for person-year calculations

tmerge

Time based merge for survival data

untangle.specials

Help Process the specials' Argument of the terms' Function.

uspop2

Projected US Population

vcov.coxph

Variance-covariance matrix

yates

Population prediction

yates_setup

Method for adding new models to the yates function.

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.