Analysis and Visualization of Archaeological Count Data
Bootstrap Estimation
Composition Index
Coerce to a Data Frame
Alpha Diversity
Diversity Index
Evenness
Evenness Index
Heterogeneity
Heterogeneity Index
Abundance-based Coverage Estimator
Baxter's Rarefaction
Berger-Parker Dominance Index
Binomial Co-Occurrence Assessment
Boone Heterogeneity Measure
Brainerd-Robinson Quantitative Index
Bray-Curtis Similarity
Brillouin Diversity Index.
Chao1 Estimator
Chao2 Estimator
Cody Measure
Hurlbert's Rarefaction
Incidence-based Coverage Estimator
Jaccard Index
Margalef Richness Index
McIntosh Dominance Index.
Menhinick Richness Index
Morisita-Horn Quantitative Index
Routledge Measures
Shannon-Wiener Diversity Index
Simpson Dominance Index
Dice-Sorensen Qualitative Index
Squares Estimator
Whittaker Measure
Wilson Measure
Jackknife Estimation
Matrigraph
Get or Set Parts of an Object
Number of Observed Species
Co-Occurrence
Bertin Diagram
Dice-Leraas Diagram
Ford Diagram
Heatmap
Matrix Plot
Rank Plot
Spot Plot
Diversity Plot
Rarefaction Plot
Diversity Profiles
Rarefaction
Rarefaction Index
Objects exported from other packages
Richness
Richness Index
Seriograph
SHE Analysis
Similarity
Measure Diversity by Comparing to Simulated Assemblages
Deprecated Functions in tabula
tabula: Analysis and Visualization of Archaeological Count Data
Diversity Test
Turnover
An easy way to examine archaeological count data. This package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). It allows to easily visualize count data and statistical thresholds: rank vs abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams, etc.
Useful links